Publications
Regulation of single-cell genome organization into TADs and chromatin nanodomains
Chromatin and cell biologySzabo, Q., Donjon, A., Jerkovic, I., Papadopoulos, G.L., Cheutin, T., Bonev, B., Nora, E., Bruneau, B.G., Bantignies, F., and Cavalli, G.
Metformin partially reverses the inhibitory effect of co-culture with ER-/PR-/HER2+ breast cancer cells on biomarkers of monocyte antitumor activity
Mammalian Cell BiologyDahmani Z., Addou-Klouche L, Gizard F., Dahou S, Messaoud A, Chahinez Djebri N, Benaissti M.I, Mostefaoui M, Terbeche H, Nouari W, Miliani M, Lefranc . , Fernandez A, Lamb N J. and Aribi M.
PRDM9 activity depends on HELLS and promotes local 5-hydroxymethylcytosine enrichment.
Meiosis and recombinationImai Y, Biot M, Clément J, Teragaki M, Urbach S, Robert T, Baudat F, Grey C, de Massy B
DNA Repair Expression Profiling to Identify High-Risk Cytogenetically Normal Acute Myeloid Leukemia and Define New Therapeutic Targets
Epigenome modifications and genomic instability in normal and malignant B cellsLudovic Gabellier, Caroline Bret, Guillaume Bossis, Guillaume Cartron and Jérôme Moreaux
Re-assessment of the involvement of <i>Snord115</i> in the serotonin 2C receptor pathway in a genetically relevant mouse model.
Systemic impact of small regulatory RNAsHebras J, Marty V, Personnaz J, Mercier P, Krogh N, Nielsen H, Aguirrebengoa M, Seitz H, Pradere JP, Guiard BP, Cavaille J
A predictable conserved DNA base composition signature defines human core DNA replication origins.
Replication and Genome DynamicsAkerman I, Kasaai B, Bazarova A, Sang PB, Peiffer I, Artufel M, Derelle R, Smith G, Rodriguez-Martinez M, Romano M, Kinet S, Tino P, Theillet C, Taylor N, Ballester B, Méchali M
Tubulin modifying enzymes as target for the treatment of tau-related diseases
Tubulin codeKrzysztof Rogowski, Khaled Hached, Carole Crozet, Siem Van Der Laan
Reading the epigenetic code for exchanging DNA.
Meiosis and recombinationBiot M, de Massy B
PAF1 facilitates RNA polymerase II ubiquitination by the Elongin A complex through phosphorylation by CDK12
Gene regulationGabriel Sanchez, Jérôme Barbier, Céline Elie, Rosemary Kiernan, Sylvie Rouquier
iMOKA: ?-mer based software to analyze large collections of sequencing data
Machine learning and gene regulationClaudio Lorenzi, Sylvain Barriere, Jean-Philippe Villemin, Laureline Dejardin Bretones, Alban Mancheron, William Ritchie
Animal Models for the Study of Nucleic Acid Immunity: Novel Tools and New Perspectives
Molecular Basis of InflammationIsabelle K Vila , Maxence Fretaud , Dimitrios Vlachakis, Nadine Laguette, Christelle Langevin
Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting. 2020,
Cell Biology of RNATantale, K., Garcia-Oliver, E., L’Hostis, A., Yang, Y., Robert, MC., Gostan, T., Basu, M., Kozulic-Pirher, A., Andrau, JC., Muller, F., Basyuk, E.*, Radulescu, O.*, and E. Bertrand* *. co-corresponding authors.
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites
Maintenance of genome integrity during DNA replicationPromonet A, Padioleau I, Liu Y, Sanz L, Biernacka A, Schmitz AL, Skrzypczak M, Sarrazin A, Mettling C, Rowicka M, Ginalski K, Chedin F, Chen CL, Lin YL, Pasero P
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Non-coding RNA, epigenetics and genome stabilityMourdas Mohamed, Nguyet Thi-Minh Dang, Yuki Ogyama, Nelly Burlet, Bruno Mugat, Matthieu Boulesteix, Vincent Mérel, Philippe Veber, Judit Salces-Ortiz, Dany Severac, Alain Pélisson, Cristina Vieira, François Sabot, Marie Fablet, Séverine Chambeyron
SETX (senataxin), the helicase mutated in AOA2 and ALS4, functions in autophagy regulation
Systemic impact of small regulatory RNAsPatricia Richard, Shuang Feng, Yueh-Lin Tsai, Wencheng Li, Paola Rinchetti, Ubayed Muhith, Juan Irizarry-Cole, Katharine Stolz, Lionel A Sanz, Stella Hartono, Mainul Hoque, Saba Tadesse, Hervé Seitz, Francesco Lotti, Michio Hirano, Frédéric Chédin, Bin Tian, James L Manley
TALC: Transcription Aware Long Read Correction
Machine learning and gene regulationLucile Broseus, Aubin Thomas, Andrew J Oldfield, Dany Severac, Emeric Dubois, William Ritchie
A Retrospective Comparison of DLI and gDLI for Post-Transplant Treatment.
Epigenome modifications and genomic instability in normal and malignant B cellsLamure S, Paul F, Gagez AL, Delage J, Vincent L, Fegueux N, Sirvent A, Gehlkopf E, Veyrune JL, Yang LZ, Kanouni T, Cacheux V, Moreaux J, Bonafoux B, Cartron G, De Vos J, Ceballos P