iMOKA: ?-mer based software to analyze large collections of sequencing data
Machine learning and gene regulationClaudio Lorenzi, Sylvain Barriere, Jean-Philippe Villemin, Laureline Dejardin Bretones, Alban Mancheron, William Ritchie
Publications
Animal Models for the Study of Nucleic Acid Immunity: Novel Tools and New Perspectives
Isabelle K Vila , Maxence Fretaud , Dimitrios Vlachakis, Nadine Laguette, Christelle Langevin
Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting.
Cell Biology of RNATantale K., Garcia-Oliver, E., L’Hostis, A., Yang, Y., Robert, MC., Gostan, T., Basu, M., Kozulic-Pirher, A., Andrau, JC., Muller, F., Basyuk, E., Radulescu, O., E. Bertrand
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites
Maintenance of genome integrity during DNA replicationPromonet A, Padioleau I, Liu Y, Sanz L, Biernacka A, Schmitz AL, Skrzypczak M, Sarrazin A, Mettling C, Rowicka M, Ginalski K, Chedin F, Chen CL, Lin YL, Pasero P
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Non-coding RNA, epigenetics and genome stabilityMourdas Mohamed, Nguyet Thi-Minh Dang, Yuki Ogyama, Nelly Burlet, Bruno Mugat, Matthieu Boulesteix, Vincent Mérel, Philippe Veber, Judit Salces-Ortiz, Dany Severac, Alain Pélisson, Cristina Vieira, François Sabot, Marie Fablet, Séverine Chambeyron
SETX (senataxin), the helicase mutated in AOA2 and ALS4, functions in autophagy regulation
Systemic impact of small regulatory RNAsPatricia Richard, Shuang Feng, Yueh-Lin Tsai, Wencheng Li, Paola Rinchetti, Ubayed Muhith, Juan Irizarry-Cole, Katharine Stolz, Lionel A Sanz, Stella Hartono, Mainul Hoque, Saba Tadesse, Hervé Seitz, Francesco Lotti, Michio Hirano, Frédéric Chédin, Bin Tian, James L Manley
TALC: Transcription Aware Long Read Correction
Machine learning and gene regulationLucile Broseus, Aubin Thomas, Andrew J Oldfield, Dany Severac, Emeric Dubois, William Ritchie
A Retrospective Comparison of DLI and gDLI for Post-Transplant Treatment.
Epigenome modifications and genomic instability in normal and malignant B cellsLamure S, Paul F, Gagez AL, Delage J, Vincent L, Fegueux N, Sirvent A, Gehlkopf E, Veyrune JL, Yang LZ, Kanouni T, Cacheux V, Moreaux J, Bonafoux B, Cartron G, De Vos J, Ceballos P
Mitosis without DNA replication in mammalian somatic cells
Replication and Genome DynamicsGanier O, Lutzmann M, Cau, J, Peiffer I, Lemmers C, Zitouni S, Theillet C, Méchali M
The Mi-2 nucleosome remodeler and the Rpd3 histone deacetylase are involved in piRNA-guided heterochromatin formation
Non-coding RNA, epigenetics and genome stabilityBruno Mugat, Simon Nicot, Carolina Varela-Chavez, Christophe Jourdan, Kaoru Sato, Eugenia Basyuk, François Juge, Mikiko C. Siomi, Alain Pélisson & Séverine Chambeyron
Lysyl-tRNA synthetase produces diadenosine tetraphosphate to curb STING-dependent inflammation
J. Guerra, A.-L. Valadao, D. Vlachakis, K. Polak, I. K. Vila, C. Taffoni, T. Prabakaran, A. S. Marriott, R. Kaczmarek, A. Houel, B. Auzemery,S. Déjardin,P. Boudinot, B. Nawrot, N. J. Jones, S. R. Paludan, S. Kossida, C. Langevin and N. Laguette
A localization screen reveals translation factories and widespread co-translational protein targeting.
Cell Biology of RNAChouaib, R., Safieddine, A., Pichon, X., Kwon, OS., Samacoits, A., Traboulsi, AM., Tsanov, N., Robert, MC., Coleno, E., Poser, I., Zimmer, C., Hyman, A. A., Le Hir, H., Zibara, K., Peter, M., Mueller, F.*, Walter, T.*, E. Bertrand
IMGT® Biocuration and Comparative Study of the T Cell Receptor Beta Locus of Veterinary Species Based on Homo sapiens TRB.
IMGT® - the international ImMunoGeneTics information system®Pégorier P, Bertignac M, Chentli I, Nguefack Ngoune V, Folch G, Jabado-Michaloud J, Hadi-Saljoqi S, Giudicelli V, Duroux P, Lefranc MP, Kossida S
NF90 modulates processing of a subset of human pri-miRNAs
Gene regulationGrasso G, Higuchi T, Mac V, Barbier J, Helsmoortel M, Lorenzo C, Sanchez G, Bello M, Ritchie W, Sakamoto S, Kiernan R.
Homologous recombination and Mus81 promote replication completion in response to replication fork blockage
Maintenance of genome integrity during DNA replicationBenjamin Pardo, María Moriel‐Carretero, Thibaud Vicat, Andrés Aguilera, Philippe Pasero
Characterization of immortalized human islet stromal cells reveals a MSC-like profile with pancreatic features.
Epigenome modifications and genomic instability in normal and malignant B cellsVillard O, Armanet M, Couderc G, Bony C, Moreaux J, Noel D, De Vos J, Klein B, Veyrune JL, Wojtusciszyn A
Live-cell imaging reveals the spatiotemporal organization of endogenous RNA polymerase II phosphorylation at a single gene.
Cell Biology of RNAForero-Quintero L. S., Raymond, W., Handa, T., Saxton, M., Morisaki, T., Kimura, H., Bertrand, E., Munsky, B., T. J. Stasevich
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence
Chromatin and cell biologySati S., Bonev, B., Szabo, Q., Jost, D., Bensadoun, P., Serra, F., Loubiere