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Journal articles
2026
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- Yanti Ariyanti, Sarah Nila, Winati Nurhayu, Dimitri Dubois, Kanthi Arum Widayati, et al.. Perceptual Advantages of People Living in Semeru Volcanic Areas, Indonesia: An MRCV (Multiple Response Categorical Variable) Analysis. HAYATI Journal of Biosciences, 2026, 33 (3), pp.739-749. ⟨10.4308/hjb.33.3.739-749⟩. ⟨hal-05492915⟩
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- Guilhem Desbrosses, Fabienne Cartieaux, Olivier Rodrigues, François Boutin, Aurore Vicet, et al.. Physical and Biological Measurements of Ethylene Emission Pinpoint the Importance of EIN4, EIN3 and EIL1 in the Regulation of Ethylene Biosynthesis in Arabidopsis Thaliana. Journal of Plant Growth Regulation, 2026, 45, pp.2422-2435. ⟨10.1007/s00344-025-12020-y⟩. ⟨hal-05516826⟩
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- Dorian Kauffmann, Guillaume Gay, Julio Mateos-Langerak, Oriane Pourcelot, Virginie Georget, et al.. 2D Multimodal Image Collection for Fluorescence Prediction from Transmitted Light Microscopy. Scientific Data , 2026, Online ahead of print. ⟨10.1038/s41597-026-07004-w⟩. ⟨hal-05579341⟩
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- Taismara Kustro Garnica, Ariadni Papadaki, Maria Georga, Guilhem Zeitoun, Joumana Jabado-Michaloud, et al.. Unraveling IGK locus in dog breeds: IMGT® new insights into canine immunogenetics. NAR Genomics and Bioinformatics, 2026, 8 (1), pp.lqag020. ⟨10.1093/nargab/lqag020⟩. ⟨hal-05523590⟩
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- Laetitia Lesire, Rebecca Deprez-Poulain, Damien Bosc, Florence Leroux, Valerie Landry, et al.. Enhancing antitumour response to proteasome inhibitors with inhibitors of insulin‐degrading enzyme, a new molecular vulnerability in multiple myeloma. British Journal of Pharmacology, 2026, ⟨10.1111/bph.70407⟩. ⟨hal-05559143⟩
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- Paul Marcoux, Fabien Gava, Marie Tosolini, Pauline Gravelle, Christina Schniederjohann, et al.. Patient-Derived Lymphoma Spheroids Reveal Predictive Markers of Glofitamab Resistance in Relapsed/Refractory B-NHL. Blood, 2026, ⟨10.1182/blood.2025031309⟩. ⟨hal-05549327⟩
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- Kohei Nagao, Kazufumi Mochizuki. Linking Germline Telomere Removal to Global Programmed DNA Elimination in Tetrahymena Genome Differentiation. eLife, 2026, ⟨10.7554/eLife.109351.1⟩. ⟨hal-05390527⟩
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- Flora Paldi, Michael-Florian Szalay, Solène Dufau, Marco Di Stefano, Hadrien Reboul, et al.. Transient histone deacetylase inhibition induces cellular memory of gene expression and 3D genome folding. Nature Genetics, 2026, 58 (2), pp.404-417. ⟨10.1038/s41588-025-02489-4⟩. ⟨hal-05569730⟩
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- Manon Philippe, Soha Salloum, Floric Slimani, Davide Normanno, Isabelle Barbosa, et al.. Co-translational determination of quaternary structures in chaperone factories. Nature Communications, 2026, 17 (1), pp.1978. ⟨10.1038/s41467-026-68687-8⟩. ⟨hal-05482009v2⟩
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- Gaoussou Sanou, Taciana Manso, Konstantin Todorov, Véronique Giudicelli, Patrice Duroux, et al.. Therapeutic monoclonal antibodies repurposing in oncology via IMGT/mAb-KG embeddings. BMC Medical Informatics and Decision Making, 2026, ⟨10.1186/s12911-026-03394-4⟩. ⟨hal-05559598⟩
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Journal articles
2025
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- Fatima Alhourani, Marine Tauziet, Margaux Ayeul, Pierre Dambrun, Hiba Daher, et al.. Targeting SUV4-20H Epigenetic Enzymes Enhances Topoisomerase II Poisoning in Prostate Cancer. Cancer Research, 2025, Online ahead of print. ⟨10.1158/0008-5472.CAN-24-3974⟩. ⟨hal-05354376⟩
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- Morgane Auboiron, Jocelyn Coiffard, Sylvain Kumanski, Olivier Santt, Benjamin Pardo, et al.. A CRISPR ‐Cas9‐based system for the dose‐dependent study of DNA double‐strand break sensing and repair. FEBS Journal, In press, ⟨10.1111/febs.70143⟩. ⟨hal-05155786⟩
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- Patricia Balaresque, Sébastien Delmotte, Franklin Delehelle, Andreia Moreira, Nancy Saenz-Oyhéréguy, et al.. Sex and environment shape cochlear sensitivity in human populations worldwide. Scientific Reports, 2025, 15 (1), pp.10475. ⟨10.1038/s41598-025-92763-6⟩. ⟨mnhn-05099274⟩
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- Debora Bencivenga, Emanuela Stampone, Jahanzaib Azhar, Daniela Parente, Waqar Ali, et al.. p27Kip1 and tumors: characterization of CDKN1B variants identified in MEN4 and breast cancer. Cells, 2025, 14 (3), pp.188. ⟨10.3390/cells14030188⟩. ⟨hal-05523518⟩
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- Sami Bizzari, Cybel Mehawej, Eliane Chouery, Pratibha Nair, Sandra Corbani, et al.. Blended Phenotypes in Siblings: Dual Diagnoses of Nicolaides-Baraitser and Craniosynostosis Syndromes. Molecular Syndromology, 2025, pp.1-9. ⟨10.1159/000549014⟩. ⟨hal-05468386⟩
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- Thomas Bonte, Oriane Pourcelot, Adham Safieddine, Floric Slimani, Florian Mueller, et al.. A deep learning approach for time-consistent cell cycle phase prediction from microscopy data. PLoS Computational Biology, 2025, 21 (12), pp.e1013800. ⟨10.1371/journal.pcbi.1013800⟩. ⟨hal-05458920v2⟩
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- Callum Burnard, Alban Mancheron, William Ritchie. Generating realistic artificial human genomes using adversarial autoencoders. NAR Genomics and Bioinformatics, 2025, 7 (3), pp.lqaf101. ⟨10.1093/nargab/lqaf101⟩. ⟨lirmm-05190346⟩
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- Marine Cahen, Jenny Leonard, Ophélie Dézé, Laurent Deleurme, Maïwenn Pineau, et al.. Editing B cells at the IGHA2 gene position provides alternative route to therapeutic IgA production. Mucosal Immunology, 2025, 18 (5), pp.1027-1035. ⟨10.1016/j.mucimm.2025.06.001⟩. ⟨hal-05163114⟩
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- Xia Cai, Yike Liu, Jialuo Li, Zhuoran Zhao, Xinyu Yao, et al.. Transposon targeting non-coding RNA transcription targets G/C-rich tracts and is facilitated by an intrinsically disordered protein in Tetrahymena. Bioarxiv, 2025, ⟨10.1101/2025.10.09.681302⟩. ⟨hal-05390537⟩
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- Xia Cai, Zhihao Zhai, Tomoko Noto, Gang Dong, Xue Wang, et al.. A specialized TFIIB is required for transcription of transposon-targeting noncoding RNAs. Nucleic Acids Research, 2025, 53 (9), ⟨10.1093/nar/gkaf427⟩. ⟨hal-05390560⟩
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- Margot Celerie, Andrew Oldfield, William Ritchie. SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection. Bioinformatics Advances, 2025, ⟨10.1093/bioadv/vbaf282⟩. ⟨hal-05380397⟩
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- Roman M Chabanon, Liudmila Shcherbakova, Magali Lacroix-Triki, Marine Aglave, Jean Zeghondy, et al.. Autocrine interferon poisoning mediates ADAR1-dependent synthetic lethality in BRCA1/2-mutant cancers. Nature Communications, 2025, 16 (1), pp.6972. ⟨10.1038/s41467-025-62309-5⟩. ⟨hal-05378533⟩
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- Christophe Chapard, Nathalie Bastié, Axel Cournac, Laura Chaptal, Henri Mboumba, et al.. RNA Pol II-based regulations of chromosome folding. Cell Genomics, 2025, ⟨10.1016/j.xgen.2025.100970⟩. ⟨hal-05121450⟩
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- Djamila Chemlal, Camille Pochard, Valentin Jacquier, Angélique Bruyer, Ludovic Gabellier, et al.. CD200 immune checkpoint expression is associated with inferior outcome in multiple myeloma patients treated with anti-CD38 monoclonal antibodies. OncoImmunology, 2025, 14 (1), pp.2532226. ⟨10.1080/2162402X.2025.2532226⟩. ⟨hal-05527272⟩
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- Salvatrice Ciccarese, Marie-Paule Lefranc, Giulia C M Perrone, Pietro D’addabbo, Ciro Leonardo Pierri. Three-dimensional modeling of Camelus dromedarius T cell receptor Gamma (TRG)_Delta (TRD)/CD1D complex reveals different binding interactions depending on the TRD CDR3 length. Antibodies, 2025, 14 (2), pp.46. ⟨10.3390/antib14020046⟩. ⟨hal-05523866⟩
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- Julien A Clain, Morgane Picard, Henintsoa Rabezanahary, Sonia André, Steven Boutrais, et al.. Immune alterations and viral reservoir atlas in SIV-infected chinese rhesus macaques. Infectious Disease Reports, 2025, 17 (1), pp.12. ⟨10.3390/idr17010012⟩. ⟨hal-05521142⟩
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- Flavie Coquel, Sing-Zong Ho, Keng-Chang Tsai, Chun-Yen Yang, Antoine Aze, et al.. Synergistic effect of inhibiting CHK2 and DNA replication on cancer cell growth. eLife, 2025, 13, pp.RP104718. ⟨10.7554/eLife.104718⟩. ⟨hal-05378520⟩
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- Rosa Milagros Corrales, Jeremy Vincent, Lucien Crobu, Rachel Neish, Binita Nepal, et al.. Tubulin detyrosination shapes Leishmania cytoskeletal architecture and virulence. Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (3), pp.e2415296122. ⟨10.1073/pnas.2415296122⟩. ⟨hal-05351407⟩
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- Myriam Croze, Alice Paladin, Stefania Zingale, Sofia Alemanno, Franco Nicolis, et al.. Genomic diversity and structure of prehistoric alpine individuals from the Tyrolean Iceman’s territory. Nature Communications, 2025, 16 (1), pp.6431. ⟨10.1038/s41467-025-61601-8⟩. ⟨hal-05521022⟩
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- Pauline de Sousa, Hervé Seitz. Prix Nobel de physiologie ou de médecine 2024 : Gary Ruvkun et Victor Ambros. Médecine/Sciences, 2025, 41 (2), pp.180-185. ⟨10.1051/medsci/2025012⟩. ⟨hal-05083438⟩
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- Sandrine Denaud, Gonzalo Sabarís, Marco Di Stefano, Giorgio-Lucio Papadopoulos, Bernd Schuettengruber, et al.. Determining the functional relationship between epigenetic and physical chromatin domains in Drosophila. Genome Biology, 2025, 26 (1), pp.116. ⟨10.1186/s13059-025-03587-6⟩. ⟨hal-05313571⟩
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- Axelle Donjon, Charlene Boumendil. Using LEXY and LINuS Optogenetics Tools and Automated Image Analysis to Quantify Nucleocytoplasmic Transport Dynamics in Live Cells. Journal of visualized experiments : JoVE, 2025, 221, ⟨10.3791/68585⟩. ⟨hal-05384041⟩
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- Joey Dufourd, Thi Hai Yen Huynh, Sandrine Sauzet, Quynh Huong Lai, Francesco Abagnale, et al.. TELS1 stabilizes t-loops independently of TRF2 and controls telomere length in pluripotent cells. Cell Reports, 2025, 44 (9), pp.116260. ⟨10.1016/j.celrep.2025.116260⟩. ⟨hal-05360233⟩
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- Laure Dutrieux, Sara Ovejero, Antoine Guillemin, Miss Leriem Zellagui, Elke de Bruyne, et al.. Targeting transcription-replication conflicts using G-quadruplexes stabilizers in multiple myeloma. Blood Neoplasia, 2025, 2 (2), pp.100072. ⟨10.1016/j.bneo.2025.100072⟩. ⟨hal-05343640⟩
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- Anthony Feral, Guillaume Marcellin, Yoann Lannay, Camille Hennebert, Yazid Souf, et al.. Development of Low-Nanomolar Covalent Epoxide Inhibitors of Tubulin Detyrosinating Enzymes VASH1&2. Journal of Medicinal Chemistry, 2025, 68 (17), pp.18335-18355. ⟨10.1021/acs.jmedchem.5c00980⟩. ⟨hal-05328434⟩
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- Anna-Sophie Fiston-Lavier, Emira Cherif, Marie-Ka Tilak, Arnaud Soulier, Catherine Breton, et al.. Why and how to set up a Bioinformatics Learning Lab (BILL). PLoS Computational Biology, 2025, 21 (8), pp.e1013236. ⟨10.1371/journal.pcbi.1013236⟩. ⟨hal-05279437⟩
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- Maximilian Fitz-James, Gonzalo Sabarís, Peter Sarkies, Frédéric Bantignies, Giacomo Cavalli. Interchromosomal contacts between regulatory regions trigger stable transgenerational epigenetic inheritance in Drosophila. Molecular Cell, 2025, 85 (4), pp.677-691.e6. ⟨10.1016/j.molcel.2024.11.021⟩. ⟨hal-05019382⟩
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- Sandrine Gimenez, Emna Hamrouni, Sonia André, Morgane Picard, Calayselvy Soundaramourty, et al.. Monocytic reactive oxygen species–induced T-cell apoptosis impairs cellular immune response to SARS-CoV-2 mRNA vaccine. Journal of Allergy and Clinical Immunology, 2025, 155 (5), pp.1635-1646. ⟨10.1016/j.jaci.2025.01.003⟩. ⟨hal-05523727⟩
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- Marion Haas, Sabrina Cherfa, Léa Nguyen, Maxence Bourgoin, Gersende Caron, et al.. PIM2 inhibition promotes MCL1 dependency in plasma cells involving integrated stress response-driven NOXA expression. Nature Communications, 2025, 16 (1), pp.256. ⟨10.1038/s41467-024-55572-5⟩. ⟨hal-04883435⟩
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- Ali Haidar, Martine Simonelig, Anne Ramat. Visualization of mRNA Translation Within Germ Granule Biphasic Organization in Drosophila Early Embryo. Bio-protocol , 2025, 15 (1367), pp.e5242. ⟨10.21769/BioProtoc.5242⟩. ⟨hal-05081526⟩
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- Sahar Hani, Caroline Mercier, Pascale David, Edouard Bertrand, Thierry Desnos, et al.. Live Single-Cell Transcriptional Dynamics in Plant Cells. Methods in Molecular Biology, 2025, Methods in Molecular Biology, 2875, pp.37-58. ⟨10.1007/978-1-0716-4248-1_4⟩. ⟨hal-05586289⟩
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- Sahar Hani, Caroline Mercier, Pascale David, Edouard Bertrand, Thierry Desnos, et al.. Live Single-Cell Transcriptional Dynamics in Plant Cells. Chemical Reviews, 2025, Methods in Molecular Biology, 2875 (9), pp.37-58. ⟨10.1007/978-1-0716-4248-1_4⟩. ⟨hal-05074197⟩
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- Charles Herbaux, E. Bachy, R. Bouabdallah, S. Guidez, O. Casasnovas, et al.. Atezolizumab, obinutuzumab and venetoclax for the treatment of patients with relapsed/refractory B non-Hodgkin lymphoma: Final analysis of a phase II trial from the LYSA group.. British Journal of Haematology, 2025, British Journal of Haematology, ⟨10.1111/bjh.20109⟩. ⟨hal-05096436⟩
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- Hathaichanok Impheng, Ghislain Gillard, Nuttanid Numnoi, Anthony Feral, Matthieu Simon, et al.. Peptide-based covalent inhibitor of tubulin detyrosination promotes mesenchymal-to-epithelial transition in lung cancer cells. Proceedings of the National Academy of Sciences of the United States of America, 2025, 123, 123 (1), pp.e2514990123. ⟨10.1073/pnas.2514990123⟩. ⟨hal-05441335⟩
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- Valentin Jacquier, Andréa Romero, Caroline Molinaro, Ritu Somayaji, Matthieu Abouladze, et al.. Development of a robust BH3 drug toolkit for precision medicine in hematologic malignancies. Theranostics, 2025, 15 (12), pp.5705-5718. ⟨10.7150/thno.107852⟩. ⟨hal-05521232⟩
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- Cyprien Jahan, Lucie Bonnet-Madin, Shinichi Machida, Bijan Sobhian, Suzie Thenin-Houssier, et al.. Unintegrated HIV-1 DNA recruits cGAS via its histone-binding domain to escape innate immunity. Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (11), pp.e2424465122. ⟨10.1073/pnas.2424465122⟩. ⟨hal-05085506⟩
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- Jennifer Jungfleisch, Neus Mestre-Farràs, Raúl Gómez-Riera, Oriane Pourcelot, Edouard Bertrand, et al.. eIF2A regulates cell migration in a translation-independent manner. Science Advances , 2025, 11 (31), ⟨10.1126/sciadv.adu5668⟩. ⟨hal-05382031⟩
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- Felipe Leon-Diaz, Célia Chamontin, Sébastien Lainé, Marius Socol, Edouard Bertrand, et al.. Translation of unspliced retroviral genomic RNA in the host cell is regulated in both space and time. Journal of Cell Biology, 2025, 224 (4), ⟨10.1083/jcb.202405075⟩. ⟨hal-04938312⟩
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- Francesca Lorenzini, Johanna Marines, Julien Le Friec, Nam Do Khoa, Maria Angela Nieto, et al.. Melanoma innervation, noradrenaline and cancer progression in zebrafish xenograft model. Cell Death Discovery, 2025, 11 (1), pp.260. ⟨10.1038/s41420-025-02523-8⟩. ⟨hal-05530009⟩
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- Ian Magill, Val Piekarsa, Sofia Kossida, Josh Croteau, Amy Lee, et al.. Genomic specificity of anti-mouse TCR mAbs determined by single-cell RNAseq. Journal of Immunology, 2025, 214 (9), pp.2202-2210. ⟨10.1093/jimmun/vkaf094⟩. ⟨hal-05304390⟩
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- Taciana Manso, Gaoussou Sanou, Christos Nousias, Imene Maalem, François Boutin, et al.. Identification of engineered IMGT Fc variants in IMGT/mAb-DB, a database of therapeutic antibodies and fusion proteins. mAbs, 2025, 17 (1), pp.2594260. ⟨10.1080/19420862.2025.2594260⟩. ⟨hal-05420303⟩
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- Anne-Marie Martinez, Giacomo Cavalli. A possible role for epigenetics in cancer initiation. Comptes Rendus. Biologies, 2025, 348 (G1), pp.43-53. ⟨10.5802/crbiol.171⟩. ⟨hal-05075889⟩
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- Cybel Mehawej, Eliane Chouery, Roula Farah, Alia Khalil, Setrida El Hachem, et al.. Endophilin A2 Deficiency Impairs Antibody Production in Humans. Journal of Clinical Immunology, 2025, 45 (1), pp.37. ⟨10.1007/s10875-024-01827-1⟩. ⟨hal-05264579⟩
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- Emma Miglierina, Julien Bouder, Delfina Ordanoska, Maïwenn Pineau, Simon Leonard, et al.. DIS3 licenses B cells for plasma cell differentiation in humans. Cellular and molecular immunology, 2025, 23 (1), pp.31-47. ⟨10.1038/s41423-025-01369-5⟩. ⟨hal-05417577⟩
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- Laura Morano, Nadia Vezzio-Vié, Adam Aissanou, Tom Egger, Antoine Aze, et al.. TopBP1 biomolecular condensates as a new therapeutic target in advanced-stage colorectal cancer. eLife, 2025, 14, pp.RP106196. ⟨10.7554/eLife.106196⟩. ⟨hal-05341698⟩
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- Laura Morano, Nadia Vie, Adam Aissanou, Dana Hodroj, Véronique Garambois, et al.. Shining light on drug discovery: optogenetic screening for TopBP1 biomolecular condensate inhibitors. NAR Cancer, 2025, 7 (4), pp.zcaf041. ⟨10.1093/narcan/zcaf041⟩. ⟨hal-05434023⟩
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- Catharina Muylaert, Lien Ann van Hemelrijck, Arne van der Vreken, Robbe Heestermans, Hatice Satilmis, et al.. The de novo DNA methyltransferase 3B is a novel epigenetic regulator of MYC in multiple myeloma, representing a promising therapeutic target to counter relapse. Journal of experimental & clinical cancer research, 2025, 44 (1), pp.125. ⟨10.1186/s13046-025-03382-y⟩. ⟨hal-05523791⟩
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- Julie Noguerol, Karl Laviolette, Margot Zahm, Adeline Chaubet, Ambrine Sahal, et al.. Heterochromatic gene silencing controls CD4+ T cell susceptibility to regulatory T cell-mediated suppression in a murine allograft model. Nature Communications, 2025, 16 (1), pp.566. ⟨10.1038/s41467-025-55848-4⟩. ⟨hal-04893300⟩
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- Yoshiaki Nosaka, Masahiro Nagano, Yukihiro Yabuta, Baku Nakakita, So Nagaoka, et al.. Generation of germinal-vesicle oocytes from mouse embryonic stem cells under an ovarian soma-free condition. Developmental Cell, 2025, 60 (21), pp.2976-2994.e13. ⟨10.1016/j.devcel.2025.06.008⟩. ⟨hal-05399054⟩
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- Sara Ovejero, Julie Devin, Laura Alibert, Camille Soun, Yea‐lih Lin, et al.. Synthetic Lethal Combinations of DNA Repair Inhibitors and Genotoxic Agents to Target High‐Risk Diffuse Large B Cell Lymphoma. Hematological Oncology, 2025, 43 (5), pp.e70131. ⟨10.1002/hon.70131⟩. ⟨hal-05515319⟩
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- Sara Ovejero, Laura Alibert, Julie Devin, Tatiana Cañeque, Valentin Jacquier, et al.. Ironomycin induces mantle cell lymphoma cell death by targeting iron metabolism addiction. Theranostics, 2025, 15 (7), pp.2834-2851. ⟨10.7150/thno.101821⟩. ⟨hal-05343829⟩
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- Ariadni Papadaki, Maria Georga, Joumana Jabado-Michaloud, Géraldine Folch, Guilhem Zeitoun, et al.. IMGT® analysis of the human IGH locus: unveiling novel polymorphisms and copy number variations in 15 genome assemblies from diverse ancestral backgrounds. NAR Genomics and Bioinformatics, 2025, 7 (3), pp.lqaf127. ⟨10.1093/nargab/lqaf127⟩. ⟨hal-05288863⟩
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- Salomé Papereux, Ludovic Leconte, Cesar Augusto Valades-Cruz, Tianyan Liu, Julien Dumont, et al.. DeepCristae, a CNN for the restoration of mitochondria cristae in live microscopy images. Communications Biology, In press, 8 (1), pp.320. ⟨10.1038/s42003-025-07684-x⟩. ⟨hal-04295317v2⟩
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- Yannick Perez, Fatima Alhourani, Julie Patouillard, Cyril Ribeyre, Marion Larroque, et al.. Cell-cycle dependent inhibition of BRCA1 signaling by the lysine methyltransferase SET8. Cell Cycle, 2025, 24 (1-4), pp.43-65. ⟨10.1080/15384101.2025.2508114⟩. ⟨hal-05354386⟩
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Journal articles
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